Package: transPlotR 0.0.5
transPlotR: Visualize Transcript Structures in Elegant Way
To visualize the gene structure with multiple isoforms better, I developed this package to draw different transcript structures easily.
Authors:
transPlotR_0.0.5.tar.gz
transPlotR_0.0.5.zip(r-4.5)transPlotR_0.0.5.zip(r-4.4)transPlotR_0.0.5.zip(r-4.3)
transPlotR_0.0.5.tgz(r-4.5-any)transPlotR_0.0.5.tgz(r-4.4-any)
transPlotR_0.0.5.tar.gz(r-4.5-noble)transPlotR_0.0.5.tar.gz(r-4.4-noble)
transPlotR_0.0.5.tgz(r-4.4-emscripten)transPlotR_0.0.5.tgz(r-4.3-emscripten)
transPlotR.pdf |transPlotR.html✨
transPlotR/json (API)
| # Install 'transPlotR' in R: |
| install.packages('transPlotR', repos = c('https://junjunlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/junjunlab/transplotr/issues
- gtf - This is a test data for this package test data describtion
bedbigwiggenelinkvistranscriptvisualization
Last updated 2 years agofrom:f77b061104. Checks:7 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 27 2025 |
| R-4.5-win | OK | Jan 27 2025 |
| R-4.5-mac | OK | Jan 27 2025 |
| R-4.5-linux | OK | Jan 27 2025 |
| R-4.4-win | OK | Jan 27 2025 |
| R-4.4-mac | OK | Jan 27 2025 |
| R-4.3-win | OK | Dec 28 2024 |
Exports:%>%bedViscalcuRotatedCoordlinkVisloadBigWigtrackVistrancriptVis
Dependencies:abindaskpassbackportsbase64encBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbroombslibcachemcallrcellrangerclicliprcodetoolscolorspaceconflictedcowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsformatRfsfurrrfutile.loggerfutile.optionsfuturegarglegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgeomtextpathggarcheryggh4xggnewscaleggplot2globalsgluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshttridsIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlatticelifecyclelistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemodelrmunsellnlmeopensslparallellypillarpkgconfigprettyunitsprocessxprogresspspurrrR6raggrappdirsRColorBrewerRCurlreadrreadxlrematchrematch2reprexrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsrstudioapirtracklayerrvestS4ArraysS4VectorssassscalesselectrsnowSparseArraystringistringrSummarizedExperimentsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbUCSC.utilsutf8uuidvctrsviridisLitevroomwithrxfunXMLxml2XVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bedVis | bedVis |
| calcuRotatedCoord | calcuRotatedCoord |
| This is a test data for this package test data describtion | gtf |
| linkVis | linkVis |
| loadBigWig | loadBigWig |
| trackVis | trackVis |
| trancriptVis | trancriptVis |
