Package: GseaVis 0.1.0

GseaVis: Implement for 'GSEA' Enrichment Visualization

Mark your interesting genes on plot and support more parameters to handle your own gene set enrichment analysis plot.

Authors:Jun Zhang [aut, cre], Guangchuang Yu [ctb]

GseaVis_0.1.0.tar.gz
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GseaVis_0.1.0.tgz(r-4.4-any)GseaVis_0.1.0.tgz(r-4.3-any)
GseaVis_0.1.0.tar.gz(r-4.5-noble)GseaVis_0.1.0.tar.gz(r-4.4-noble)
GseaVis_0.1.0.tgz(r-4.4-emscripten)GseaVis_0.1.0.tgz(r-4.3-emscripten)
GseaVis.pdf |GseaVis.html✨
GseaVis/json (API)

# Install 'GseaVis' in R:

install.packages('GseaVis', repos = c('https://junjunlab.r-universe.dev', 'https://cloud.r-project.org'))

The latest version of this package failed to build. Look at thebuild logs for more information.

Bug tracker:https://github.com/junjunlab/gseavis/issues

Datasets:

intergrated - This is a test data for this package test data describtion

On CRAN:

10 exports 114 stars 4.43 score 136 dependencies 33 scripts 509 downloads

Last updated 9 months agofrom:f20de046d9. Checks:OK: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Jun 22 2024

Exports:%>%dfGO2gseaResult dfKEGG2gseaResult dotplotGsea GSEAmultiGP gseaNb gsInfo gsInfoNew readGseaFile volcanoGsea

Dependencies:AnnotationDbi ape aplot askpass BH Biobase BiocGenerics BiocParallel Biostrings bit bit64 blob cachem circlize cli clipr clusterProfiler codetools colorspace cowplot cpp11 crayon curl data.table DBI digest DOSE downloader dplyr enrichplot fansi farver fastmap fastmatch fgsea formatR fs futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData ggforce ggfun ggnewscale ggplot2 ggplotify ggpp ggraph ggrepel ggsci ggtree GlobalOptions glue GO.db GOSemSim graphlayouts gridExtra gridGraphics gson gtable HDO.db hms httr igraph IRanges isoband jsonlite KEGGREST labeling lambda.r lattice lazyeval lifecycle lubridate magrittr MASS Matrix memoise mgcv mime munsell nlme openssl patchwork pillar pkgconfig plogr plyr png polyclip polynom prettyunits progress purrr qvalue R6 RColorBrewer Rcpp RcppArmadillo RcppEigen readr reshape2 rlang RSQLite S4Vectors scales scatterpie shadowtext shape snow stringi stringr sys systemfonts tibble tidygraph tidyr tidyselect tidytree timechange treeio tweenr tzdb UCSC.utils utf8 vctrs viridis viridisLite vroom withr xts XVector yulab.utils zlibbioc zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create gseaResult Object from Enrichment Analysis Output Dataframe	dfGO2gseaResult
Create gseaResult Object from KEGG Enrichment Analysis Output Dataframe	dfKEGG2gseaResult
dotplotGsea	dotplotGsea
Perform GSEA Multi-group Plotting	GSEAmultiGP
gseaNb	gseaNb
gsInfo	gsInfo
gsInfoNew	gsInfoNew
This is a test data for this package test data describtion	intergrated
readGseaFile	readGseaFile
volcanoGsea	volcanoGsea

Usage by other packages (reverse dependencies)