Package: GseaVis 0.1.0
GseaVis: Implement for 'GSEA' Enrichment Visualization
Mark your interesting genes on plot and support more parameters to handle your own gene set enrichment analysis plot.
Authors:
GseaVis_0.1.0.tar.gz
GseaVis_0.1.0.zip(r-4.5)GseaVis_0.1.0.zip(r-4.4)GseaVis_0.1.0.zip(r-4.3)
GseaVis_0.1.0.tgz(r-4.4-any)GseaVis_0.1.0.tgz(r-4.3-any)
GseaVis_0.1.0.tar.gz(r-4.5-noble)GseaVis_0.1.0.tar.gz(r-4.4-noble)
GseaVis_0.1.0.tgz(r-4.4-emscripten)GseaVis_0.1.0.tgz(r-4.3-emscripten)
GseaVis.pdf |GseaVis.html✨
GseaVis/json (API)
| # Install 'GseaVis' in R: |
| install.packages('GseaVis', repos = c('https://junjunlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/junjunlab/gseavis/issues
- intergrated - This is a test data for this package test data describtion
Last updated 16 days agofrom:133ef624c9. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 07 2024 |
| R-4.5-win | WARNING | Nov 07 2024 |
| R-4.5-linux | WARNING | Nov 07 2024 |
| R-4.4-win | WARNING | Nov 07 2024 |
| R-4.4-mac | WARNING | Nov 07 2024 |
| R-4.3-win | WARNING | Nov 07 2024 |
| R-4.3-mac | WARNING | Nov 07 2024 |
Exports:%>%circGseadfGO2gseaResultdfKEGG2gseaResultdotplotGseaenrich_ridge_plotGSEAmultiGPgseaNbgsInfogsInfoNewreadGseaFilesankeyGoPlotvolcanoGsea
Dependencies:abindAnnotationDbiapeaplotaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemcirclizeclicliprclusterProfilercodetoolscolorspacecols4allcowplotcpp11crayoncurldata.tableDBIdigestDOSEdplyrenrichplotfansifarverfastmapfastmatchfgseaforcatsformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataggforceggfunggnewscaleggplot2ggplotifyggppggrepelggridgesggsankeyggsciggtangleggtreeGlobalOptionsglueGO.dbGOSemSimgridExtragridGraphicsgsongtablehmshttrigraphIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrplyrpngpolyclippolynomprettyunitsprogresspurrrqvalueR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenreadrreshape2rlangRSQLiteS4VectorsscalesscatterpieshapesnowspacesXYZstringdiststringistringrsyssystemfontstibbletidyrtidyselecttidytreetimechangetreeiotweenrtzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxtsXVectoryulab.utilszlibbioczoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Circular Gene Set Enrichment Analysis Plot | circGsea |
| Create gseaResult Object from Enrichment Analysis Output Dataframe | dfGO2gseaResult |
| Create gseaResult Object from KEGG Enrichment Analysis Output Dataframe | dfKEGG2gseaResult |
| dotplotGsea | dotplotGsea |
| Generate Enrichment Ridge Plot | enrich_ridge_plot |
| Perform GSEA Multi-group Plotting | GSEAmultiGP |
| gseaNb | gseaNb |
| gsInfo | gsInfo |
| gsInfoNew | gsInfoNew |
| This is a test data for this package test data describtion | intergrated |
| readGseaFile | readGseaFile |
| sankeyGoPlot | sankeyGoPlot |
| volcanoGsea | volcanoGsea |
